IWGSC RefSeq v1.1 annotation

IWGSC RefSeq v1.1 annotation is publicly available at URGI

The IWGSC RefSeq v1.1 annotation is now publicly available for download at URGI.

The IWGSC RefSeq v1.1 annotation is now publicly available for download at URGI.

The IWGSC RefSeq v1.1 annotation is publicly available for download and display in a browser and in a InterMine .

It is the new version of the genes annotation which refer to the same assembly (RefSeq v1.0). It includes genes and RNAseq mapping.

In comparison with the v1.0 annotation, three modifications were made:

  • add wrongly removed genes during the integration
  • remove LC which have an over lap with manually curated genes  (IWGSC_v1.1_LC_removed.ids )
  • update ids of TE - LC genes coming from the HC set in order to fit with the LC naming and  numbering (IWGSC_v1.1_LC.correspondanceTEHC.txt).

Publication date: 12 January 2021 | By: ic