IWGSC RefSeq v1.0 annotation is publicly available at URGI

IWGSC RefSeq v1.0 annotation is available for download and display in a browser and in a InterMine .

The IWGSC RefSeq v1.0 annotation includes gene models generated by integrating predictions made by INRA-GDEC using Triannot and PGSB using their customised pipeline (previously MIPS pipeline). The integration was undertaken by the Earlham institute (EI), who have also added UTRs to the gene models where supporting data are available. Gene models have been assigned to high confidence (HC) or low confidence (LC) classes based on completeness, similarity to genes represented in protein and DNA databases and repeat content. The automated assignment of functional annotation to genes has been generated by PGSB based on AHRD parameters.

In addition, annotated transposable elements (TEs), non-coding RNAs, varietal SNPs, RH maps, GBS maps, optical maps are available.

The syntenic gene pairs are available for download.